PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743812
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 246aa    MW: 27119 Da    PI: 6.1631
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743812genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-06533634
   zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
               C+ ++++e++ fC  ++  lC+ C  + H
  676743812  5 CDVCDKEEASVFCCADEAALCNGCDRHVH 33
               *************************9988 PP

2zf-B_box29.12.1e-095592338
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
               ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  676743812 55 APLCDICGERRALLFCQEDRAILCRECDIPIHQAneHT 92
               789*****************************767876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
SMARTSM003362.3E-7447IPR000315B-box-type zinc finger
CDDcd000219.12E-6533No hitNo description
SMARTSM003366.3E-1653100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18253100IPR000315B-box-type zinc finger
PfamPF006437.6E-85593IPR000315B-box-type zinc finger
CDDcd000219.68E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI  60
CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL TGVKISASPS AYPRASNSNS  120
NSAAALSRAK TRPKSVSGEV PSSASSEVFA SSPSTTTSNY YYGLEENYHG VSDSGSGSGC  180
TGTGSISEYL METLPGWRVE DLLEHPSCVY EDNNICTNNN NNESYKVYDG SSQYHHQGFW  240
EQKPFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446431.11e-152PREDICTED: B-box zinc finger protein 20
SwissprotQ0IGM71e-147BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A078FGM41e-152A0A078FGM4_BRANA; BnaC03g60330D protein
TrEMBLA0A0D3BJC31e-152A0A0D3BJC3_BRAOL; Uncharacterized protein
STRINGBra010713.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-106DBB family protein